Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs116896792 chr12:122948907 T/C 5.75E-9 523 39.17 45.13 5.12 KM Plot
KIRC rs116921059 chr19:56148965 C/A 1.67E-7 511 42.75 37.37 6.02 KM Plot
KIRC rs11706221 chr3:48373262 G/A 2.75E-5 508 39.17 42.88 23.1 KM Plot
KIRC rs11706277 chr3:48360433 A/G 6.79E-6 527 41.13 40 17.55 KM Plot
KIRC rs11707606 chr3:48237087 A/C 6.65E-5 517 39.7 40.6 23.1 KM Plot
KIRC rs11707997 chr3:48377875 A/G 3.42E-5 506 39 42.88 23.1 KM Plot
KIRC rs11710257 chr3:48373214 T/G 3.41E-5 507 39 42.47 23.1 KM Plot
KIRC rs117133710 chr19:56148966 T/G 1.86E-7 509 43.03 37.35 6.02 KM Plot
KIRC rs11714176 chr3:48360862 C/T 2.97E-5 525 39.53 41.27 19.13 KM Plot
KIRC rs11715776 chr3:48377611 G/C 3.42E-5 506 39 42.88 23.1 KM Plot
KIRC rs11715799 chr3:48255220 A/G 6.48E-5 512 40.13 40.93 21.12 KM Plot
KIRC rs11715876 chr3:48377922 G/A 3.97E-5 506 39.08 42.47 23.1 KM Plot
KIRC rs11716848 chr3:48378500 G/A 2.75E-5 508 39.17 42.88 23.1 KM Plot
KIRC rs11717716 chr3:48375740 T/C 2.75E-5 508 39.17 42.88 23.1 KM Plot
KIRC rs11718350 chr3:48360992 T/G 2.8E-5 525 39.35 41.27 19.13 KM Plot